Drake Research Group
Odum School of Ecology, University of Georgia
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NCEAS MACHINE LEARNING WORKING GROUP WEB DATA DIRECTORY
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Introduction
This directory of data repositories was developed by the National Center for Ecological Analysis and
Synthesis Machine Learning Working Group to provide a single point of departure for ecological data
distributed on the web for free or for a nominal fee. Our goal was to provide a list of databases useful
for a wide range of possible projects and which would be relatively unencumbered by use restrictions
for both primary and methodological research. Users of this directory are encouraged to email
corrections, broken links, or additional data sources that should be listed.


Data Directory
NAME DESCRIPTION URL
Global Population Dynamics Database


Repository for population time series


http://www3.imperial.ac.uk/cpb/research/
patternsandprocesses/gpdd



Fishbase









Very large database about fish
(online database not easily queried for batch data download but also available as an MS ACCESS database)


http://fishbase.org/search.php








Atlas of United
States Trees



Maps of tree distribution in the US


http://esp.cr.usgs.gov/data/atlas/little/


The Paleobiology Database


Web based portal for paleontological data


http://paleodb.org/cgi-bin/bridge.pl


VegBank




Data from North American vegetation plots


http://www.vegbank.org/vegbank/index.jsp



NCEAS Data Repository



Repository of metadata for ecological databases


http://knb.ecoinformatics.org/knb/style/
skins/nceas/index.html



World Health Organization Disease Statistics



Statistics for diseases monitored by the world health organization


www.who.int/research/en/
Global Health Atlas




GIS data for infectious and other diseases


http://www.who.int/globalatlas/



NCEAS scientific computing data resources


Portal for climate, digital mapping, and land use data


www.nceas.ucsb.edu/scicomp/DataLinks.html



United States Long Term Ecological Research Network





LTER data catalog contains entries for over 4000 ecological datasets from 26 LTER Network research sites.


http://www.lternet.edu/






United States Environmental Protection Agency: Environmental Monitoring and Assessment Project (EMAP)



Research program to develop the tools necessary to monitor and assess the status and trends of national ecological resources.



http://www.epa.gov/emap/








Environment Canada







A collection of Canada-wide datasets on wildlife, pollution, sustainable development, water, and weather and meteorology


http://www.ec.gc.ca/data_e.html







U.S. State Natural Heritage Programs








A collection of state-wide comprehensive and dynamic databases that track the location and status of rare species and natural communities


http://www.natureserve.org/








Biota of North America Project (BONAP)




Data for traits and distributionof ~28,000 plant types in North America. Costs $US495


http://www.bonap.org/





National Oceanographic and Atmospheric Administration (NOAA) Paleoclimatology database


Time series data from ice cores, coral, pollen, tree-rings and other





http://www.ncdc.noaa.gov/paleo/







Integrated Taxonomic Information System (ITIS)




Taxonomic information on plants, animals, fungi, and microbes for North America and the world.


http://www.itis.usda.gov/






Audubon Christmas Bird Count database





Bird counts for all bird species in the US, organized by county. Depending on location data goes back >100 years.


http://www.audubon.org/bird/cbc/hr/index.html






Intergovernmental Panel on Climate Change Data Distribution Center (IPCC-DDC)



Worldwide climate data for the last 100 years in 10 and 30 years averages and outputs of global circulation models


http://ipcc-ddc.cru.uea.ac.uk/ddc_envdata.html






NatureServe






Distribution, trait, and threatened status for animals and plants in the US (some global data)


http://www.natureserve.org/getData/index.jsp





United States Department of Agriculture Forest Service Gypsy Moth Data


Data for the spread of gypsy moth in the US over the last century.



http://www.gmsts.org/operations/





United States Geological Survey zebra mussel spread


Known occurences of zebra mussel in the US since 1988



http://nas.er.usgs.gov/taxgroup/mollusks/
zebramussel/




Missouri Botanical Garden: The Alwyn
H. Gentry Forest Transect Data set




Diversity/abundance database for hundreds of forest plots from around the world


http://www.mobot.org/MOBOT/research/
gentry/transect.shtml





Missouri Botanical garden: Gateway to Databases


Gateway to several taxonomic databases at MBG


http://www.mobot.org/MOBOT/Research/
alldb.shtml



SALVIAS: Synthesis and Analysis of Local Vegetation Inventories Across Scales



Gateway to biodiversity datasets on plant diversity





http://www.salvias.net/pages/
database_info.php







USGS Breeding bird survey




Breeding bird data roadside surveys for >30 years throughout US


http://www.mbr-pwrc.usgs.gov/bbs/




Florida Natural Areas Inventories: Florida Invasive Plants Geodatabase


Geospatial data on invasive plant occurences in Florida




http://www.fnai.org/invasivespecies.cfm





CDC MMWR:
Morbidity and mortality weekly report



Database on human cases of variety of infectious diseases



http://www.cdc.gov/mmwr/distrnds.html




North America Amphibian
Monitoring Program


Dataset of amphibian (frog and toad) call surveys from across the US


http://www.pwrc.usgs.gov/naamp/data/
public/index.cfm




Ecological archives








Ecological society of America family of journals. Free for personal or educational use but requires permission for other uses.


http://esapubs.org/archive/archive_D.htm







Geoscience
Australia


GIS data for Australia



http://www.ga.gov.au/products/


Australian Bird
Atlas







Bird data (locations for species, covering all of Australia) are available, but requires small payment. Contact details on site.


http://www.birdata.com.au/







IUCN









A worldwide species information resource comprising interlinked databases of species-related information managed by SSC's network of specialist groups


http://www.iucn.org/thermes/ssc/
our_work/sis.htm








electronic Plant information centre (ePIC)



ePIC is a project bringing together the Kew Gardens digitized information on plants


http://www.kew.org/epic/datasources/htm





Global biodiversity information facility





Intended to facilitate digitisation and global dissemination of primary biodiversity data


http://www.gbif.org/





Global Land
cover facility






Free to anyone via FTP. Online datasets may be accessed electronically through the Earth Science Data Interface (ESDI).


http://glcf.umiacs.umd.edu/data/







The Australian Natural Resources Data Library



Data portal with metadata searches and links to biological and biophysical data


http://adl.brs.gov.au/anrdl/php/




USDA Plant Links






Links to many publicly available botanical datasets across the world (most taxonomic material)


http://plants.nrcs.usda.gov/cgi_bin/
link_categories.cgi?category=linknames






USDA Soil Data
Mart


Downloads of various soils data for US


http://soildatamart.nrcs.usda.gov/


USDA Plants Database



Liverworts, hornworts, and lichens of the U.S. and its territories


http://plants.usda.gov/




The National Biological Information Infrastructure




A broad, collaborative program to provide increased access to data and information on US's biological resources.


http://www.nbii.gov







National Climatic Data Center


Active archive of weather data


http://www.ncdc.noaa.gov/oa/ncdc.html


National Geophysical Data Center







Source of geophysical data from the sun to the earth and earth's sea floor and solid earth environment, including earth observations from space


http://www.ngdc.noaa.gov/









National Oceanographic
Data Center





Data center archives & public access to global oceanographic and coastal data, products, and information.


http://www.nodc.noaa.gov/






National Biodiversity Network


Distribution maps and wildlife data for the United Kingdom


http://www.searchnbn.net/index_homepage/
index.jsp



European Environment Agency


Publicly available datasets for Europe



http://themes.eea.europa.eu/
Environmental_issues/biodiversity/data



Australian Virtual Herbarium









Data associated with scientific plant specimens in Australian herbaria, comprising six million specimen records, images, descriptive text and identification tools


http://www.chah.gov.au/avh/avh.html









NCAR/ESSL Climate and global Dynamics data sets






Climate model data archives, including imagery and Community Climate system Model (CCSM) output, store in standard data formats


http://www.cgd.ucar.edu/research/
data.html








NASA-GODDARD Space Flight center global change
master directory




Portal for diverse earth science data and services




http://gcmd.gsfc.nasa.gov





NOAA National climatic data
center home page




Portal for NOAA climate change data including satellite imagery


http://www.ncdc.noaa.gov/oa/ncdc.html




USGS Earth resources observation and science (EROS)


Portal for land information, including satellite data, offered by USGS


http://edc.usgs.gov




National Resources Canada Earth Sciences Sector



Portal for canadian Earth science information sources



http://ess.nrcan.gc.ca/index_e.php




Macquarie University Graduate School of the Environment Web site GIS and remote sensing links


Comprehensive portal to worldwide list of remote senseing/GIS resources





http://www.gse.mq.edu.au/post_grad/
rcooper/GISRSlinls/gislinks.htm








Goddard Space Flight Center EOSDIS











A source for biogeochemical and ecological data collected on the ground, from aircraft, by satellite, or have been generated by computer models. Extent of data ranges from site-specific to global, from days to years.


http://spsosun.gsfc.nasa.gov/
eosinfo/EOSDIS_Site/index.html












 


©
John M. Drake,  Odum School of Ecology, University of Georgia
 Athens, GA 30602
Ph. 706.583.5538 FAX 706.542.3344